PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15544_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 196aa    MW: 21822.9 Da    PI: 5.7661
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15544_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000284264123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         y+C  C + F++   L  H++ H
  cra_locus_15544_iso_1_len_943_ver_3 42 YECVFCRRGFNTAQALGGHMNIH 64
                                         99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.58E-64069No hitNo description
PROSITE profilePS5015710.8244269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MESINNHIGE EEEEEESAMS SSSEEDEEQK EENKLFGVGR SYECVFCRRG FNTAQALGGH  60
MNIHRKDRAR INKPMATCIP TSSPSPSSNT NINHHHQIPA ARRCSSHHQE EAEGHVVQIE  120
YRTYFPAAAS SGTLIVPAPF YANGQYRSSS LYAYDSQHRS AAGVVIQEIG SAGRRRGGIN  180
IQETEELDLE LRLGPY
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152